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Dataset uploader

To upload your own dataset you'll need at least expression data in Excel, comma-separated, or tab-delimited format. Show complete instructions

Title:
Organism:
Access Level:
Tag(s):
Pubmed ID:
GEO ID:
Description:

Step 1: Select display type

Which display type best fits your data?

SVG-based
Bar graph
Line graph
Violin plot

Step 2: Describe your data

Step 3: Upload your expression data ( .xlsx .xls .obs .csv .tab accepted )

For SVG datasets, the column headers should match the SVG's path.class attributes.

For graph-based datasets, the data column headers should be in Group--Label format, such as: Treated--0min, Treated--5min, Untreated--0min, Untreated--5min.

For datasets displayed with violin plots, generally single-cell RNA-Seq, the data column headers should be in Group--Label format, such as: Endo--Cell_1, Endo--Cell_2, Endo--Cell_3, Cochlea--Cell_1, Cochlea--Cell_2.

Note: Duplicate gene symbols will be skipped. Expression entries are stored on a "first come, first serve" basis.

Select spreadsheet file

Uploading spreadsheet

Processing expression data

The following genes are duplicate aliases and will be skipped.
The following genes were not found in our database and will be skipped.

Organize your data

Select Unwanted Columns

Click the column headers you wish to remove. These columns will not be uploaded.


Please also remove any columns containing text. This includes columns for Ensembl IDs, descriptions, GO terms, gene biotypes, etc. Some columns may already be greyed-out for you.


When finished, click Continue to go to the next step.

Rename and Rearrange Columns

Rename - Use the 'Group--Label' format to rename your columns. Here is the manual for Bar graphs and for Line graphs.

Rearrange - Drag-and-drop to rearrange how the columns will be graphed.


Standard deviations and p-values - To include these, name the columns to exactly match the expression columns they refer to, but with an '_sd' and '_pval' attached at the end, respectively. If your expression column is 'Untreated--P_0', the standard deviation column would be 'Untreated--P_0_sd'.

When finished, click Continue to go to the next step.

Rename Columns

Rename - Use short and concise names for the columns. They will be used to display expression values. For an example, here is the manual for SVG.


Standard deviations and p-values - To include these, name the columns to exactly match the expression columns they refer to, but with an '_sd' and '_pval' attached at the end, respectively. If your expression column is 'OuterHC', the standard deviation column would be 'OuterHC_sd'.



When finished, click Continue to go to the next step.

Select layout

1 plot
2 plots
3 plots

Click and drag column headers into the subplots. Use ctrl + click to select and move multiple items. To preview the graph, click 'Get graph preview'.

Upload your SVG

Once uploaded, you can assign expression columns to the path elements.

Assign Columns to SVG

Click a column header then click on an SVG element to assign expression data to that SVG element.

Note: Do not assign standard deviation or p-value columns to SVG elements. These will be handled automatically.

When finished, click Continue to go to the next step.



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Upload your SVG

Select SVG file

Step 4: Preview your graph

Adjust the graph layout using the area above and apply the changes with the 'Get graph preview' button below.

Confirm the graph layout with 'Continue'.

Step 5: Upload schematic image (optional)

Select Image file

submittingDataset submitted. We will email you when the upload is complete.